BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028D05LP1|AL428893
(854 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1305 953 0.0
>3x_Contig1305
Length = 9229
Score = 953 bits (476), Expect = 0.0
Identities = 529/552 (95%), Gaps = 1/552 (0%)
Strand = Plus / Plus
Query: 304 ttaaatmaatatcatgagatgagatgagctggatttgagacaattttattattcttcagt 363
|||||| ||||| ||||||||||||||| ||||||||||| || ||||||||| || |||
Sbjct: 15 ttaaataaatataatgagatgagatgagatggatttgagaaaaatttattattattaagt 74
Query: 364 aaaaacaaagactctaaggttgcgggaagtttatgtatacmtagtgctgccaacaaccag 423
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 75 aaaaaaaaagaatctaaggttgcgggaagtttatgtatacatagtgctgccaacaaccag 134
Query: 424 tgatatattamttgtgtgaagacaagtatgagtbctactacgactatcagacacaggaga 483
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 135 tgatatattaattgtgtgaagacaagtatgagtgctactacgactatcagacacaggaga 194
Query: 484 tctatttctgamaaattagagcagttaactcctgttgccatttcmagcacgataaammgg 543
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 195 tctatttctgaaaaattagagcagttaactcctgttgcaatttcaagcacgataaaaagg 254
Query: 544 ttatacagatatagtgaacttcctgaatggcaacaagacaatgataagattattacmggg 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 255 ttatacagatatagtgaacttcctgaatggcaacaagacaatgataagattattacaggg 314
Query: 604 tatatccgtgacactaamagtgtaaaggaatgtgtcaaatcgttatt-cttattccataa 662
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 315 tatatccgtgaaactaaaagtgtaaaggaatgtgtcaaatcgttattgcttattccataa 374
Query: 663 tgaatcgataaacatttactctcatttggtcccgactattacgtatttggtgctccttgt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgaatcgataaacatttactctcatttggtcccgactattacgtatttggtgctccttgt 434
Query: 723 tggattagcagatatgtttctcgtccctcaatttccaaactctactatgatgcaaagtgt 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tggattagcagatatgtttctcgtccctcaatttccaaactctactatgatgcaaagtgt 494
Query: 783 tatgatccatttcttcctattgggttcggtgctgtgcttaggatgcagcagctttttcca 842
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 tatgatccatgtcttcctattgggtccggtgctgtgcttaggatgcagcagctttttcca 554
Query: 843 ttgcttaaagca 854
||||||||||||
Sbjct: 555 ttgcttaaagca 566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 269
Number of sequences better than 1.0e-20: 1
length of query: 854
length of database: 10,358,551
effective HSP length: 16
effective length of query: 838
effective length of database: 10,329,639
effective search space: 8656237482
effective search space used: 8656237482
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)